Eigengenes of the pruned modules calculated using the activated targets in each module. An eigengene summarizes the expression profile of the module as a whole, mathematically it is the first principal component of the module expression data (i.e. the scaled and centered logcounts subsetted for the activated targets and the regulators of the given module). In this case, the principal component was taken across all cells irrespective of species.
Format
A data frame with 6300 rows and 8 columns:
- cell
Character, the cell barcode.
- species
Character, the name of the species.
- pseudotime
Numeric, inferred pseudotime.
- cell_type
Character, cell type annotation.
- module
Character, transcriptional regulator and direction of regulation (in this case always nameOfRegulator(+)).
- eigengene
Numeric, the eigengene (i.e. the first principal component of the scaled and centered logcounts) of the module.
- mean_expr
Numeric, the mean of the scaled and centered logcounts across all genes in the module.
- regulator_expr
Numeric, the scaled and centered logcounts of the regulator.