Distance measures per replicate pair for the original and all jackknifed versions of the pruned modules. The jackknifed versions of the modules were created by removing each target gene assigned to a module (the regulators were never excluded). The distance measures were calculated based on the correlation of intramodular connectivities: \(dist = \frac{1 - cor.kIM}{2}\) (a correlation of 1 corresponds to a distance of 0, whereas a correlation of -1 corresponds to a distance of 1). Each element of the list corresponds a jackknifed/original module version and contains the distance measures between all possible pairs of replicates for this module version.
Format
A named list with 232 elements containing the distance measures per (original or jackknifed) module version. Each element is a data frame with 72 rows and 10 columns:
- regulator
Character, transcriptional regulator.
- module_size
Integer, the numer of target genes assigned to a regulator.
- type
Character, module type (orig = original or jk = jackknifed).
- id
Character, the unique ID of the module version (format: nameOfRegulator_jk_nameOfGeneRemoved in case of module type 'jk' and nameOfRegulator_orig in case of module type 'orig').
- gene_removed
Character, the name of the gene removed by jackknifing (NA in case of module type 'orig').
- replicate1, replicate2
Character the names of the replicates compared.
- species1, species2
Character, the names of the species
replicate1andreplicate2belong to, respectively.- dist
Numeric, distance measure ranging from 0 to 1, calculated based on the correlation of intramodular connectivities.