Distance measures per replicate pair for the original (i.e. not jackknifed) pruned modules.
Format
A named list with 12 elements containing the distance measures per module. Each element is a data frame with 72 rows and 7 columns:
- regulator
Character, transcriptional regulator.
- module_size
Integer, the numer of target genes assigned to a regulator.
- replicate1, replicate2
Character the names of the replicates compared.
- species1, species2
Character, the names of the species
replicate1andreplicate2belong to, respectively.- dist
Numeric, distance measure ranging from 0 to 1, calculated based on the correlation of intramodular connectivities.
Details
The distance measures were calculated based on the correlation of intramodular connectivities: $$dist = \frac{1 - cor.kIM}{2}$$ (a correlation of 1 corresponds to a distance of 0, whereas a correlation of -1 corresponds to a distance of 1). Each element of the list corresponds to a module and contains the distance measures between all possible pairs of replicates for this module.